| Y position (Mb) | SNP Name | YCC Hg Defined | Multiplex | Polymorphism | African American (N=115) | Caucasian (N=114) |
| 2,562,931 | SRY+465 | O2b | 4 | C->T | 1.00/0.00 | 1.00/0.00 |
| 2,564,927 | SRY10831a,b | B-R, R1a | 5 | A->G, G->A | 0.01/0.99, 1.00/0.00 | 0.00/1.00, 0.95/0.05 |
| 2,566,620 | SRY9138 | K1 | 4 | C->T | 1.00/0.00 | 1.00/0.00 |
| 2,642,605 | M130 (RPS4Y) | C | 3 | C->T | 1.00/0.00 | 1.00/0.00 |
| 13,407,330 | M2 | E3a | 2 | A->G | 0.42/0.58 | 1.00/0.00 |
| 13,413,670 | DYS391 | E3 | 2 | C->G | 0.40/0.60 | 0.96/0.04 |
| 14,124,138 | M168 | C-R | 1 | C->T | 0.03/0.97 | 0.00/1.00 |
| 14,157,939 | M170 | I | 3, A | A->C | 0.97/0.03 | 0.79/0.21 |
| 14,179,223 | M182 | B2 | 2 | C->T | 0.99/0.01 | 1.00/0.00 |
| 14,232,730 | Tat | N3 | 4 | T->C | 1.00/0.00 | 0.99/0.01 |
| 14,264,427 | M174 | D | 3, A | T->C | 1.00/0.00 | 1.00/0.00 |
| 14,279,781 | M172 | J2 | 3, A | T->G | 1.00/0.00 | 0.95/0.05 |
| 14,337,676 | M201 | G | 3 | G->T | 0.99/0.01 | 0.97/0.03 |
| 14,340,899 | M198 | R1a1 | C | C->T | 1.00/0.00 | 0.95/0.05 |
| 14,818,875 | M175 | O | 1 | -5bp (+/-) | 1.00/0.00 | 1.00/0.00 |
| 14,892,152 | M207 | R | 1 | A->G | 0.73/0.27 | 0.35/0.65 |
| 18,343,057 | M3 | Q3 | 4, B | C->T | 1.00/0.00 | 1.00/0.00 |
| 20,806,634 | M5 | M | 4 | C->T | 1.00/0.00 | 1.00/0.00 |
| 20,807,275 | P3 | A2 | 2 | G->A | 1.00/0.00 | 1.00/0.00 |
| 20,903,048 | M153 | R1b3d | 5 | T->A | 1.00/0.00 | 0.99/0.01 |
| 20,926,945 | M9 | K-R | B | C->G | 0.72/0.28 | 0.33/0.67 |
| 20,927,335 | M11 | L | 3, B | A->G | 1.00/0.00 | 1.00/0.00 |
| 20,929,850 | M18 | R1b1 | 5 | +2bp (-/+) | 1.00/0.00 | 1.00/0.00 |
| 20,936,442 | M31 | A1 | 2 | G->C | 0.99/0.01 | 1.00/0.00 |
| 20,937,124 | M32 | A3 | 2 | T->C | 1.00/0.00 | 1.00/0.00 |
| 20,937,138 | M33 | E1 | 2, B | A->C | 0.97/0.03 | 1.00/0.00 |
| 20,938,391 | M35 | E3b | 2, B | G->C | 0.98/0.02 | 0.97/0.03 |
| 20,948,239 | M37 | R1b3a | 5 | C->T | 1.00/0.00 | 1.00/0.00 |
| 20,949,887 | M52 | H | 3 | A->C | 1.00/0.00 | 1.00/0.00 |
| 20,959,373 | M119 | O1 | 4, A | A->C | 1.00/0.00 | 1.00/0.00 |
| 20,961,146 | M137 | J2c | C | T->C | 1.00/0.00 | 1.00/0.00 |
| 20,961,189 | M124 | R2 | 4, C | C->T | 1.00/0.00 | 1.00/0.00 |
| 20,961,274 | M123 | E3b3 | C | G->A | 1.00/0.00 | 1.00/0.00 |
| 20,961,362 | M122 | O3 | C | T->C | 1.00/0.00 | 1.00/0.00 |
| 20,961,382 | M166 | J2f2 | C | G->A | 1.00/0.00 | 1.00/0.00 |
| 20,964,647 | M112 | B2b | A | G->A | 1.00/0.00 | 1.00/0.00 |
| 20,975,939 | M146 | B1 | 2 | A->C | 1.00/0.00 | 1.00/0.00 |
| 21,063,528 | M42 | B-R | 1 | A->T | 0.01/0.99 | 0.00/1.00 |
| 21,064,475 | M45 | P-R | 1 | G->A | 0.73/0.27 | 0.35/0.65 |
| 21,064,542 | M157 | R1a1b | 5 | A->C | 1.00/0.00 | 1.00/0.00 |
| 21,066,207 | M150 | B2a | 2 | C->T | 0.99/0.01 | 1.00/0.00 |
| 21,074,761 | M60 | B | 1 | +1bp (-/+) | 0.99/0.01 | 1.00/0.00 |
| 21,086,865 | M75 | E2 | 2, A | G->A | 0.97/0.03 | 1.00/0.00 |
| 21,090,746 | M69 | H | B | T->C | 1.00/0.00 | 1.00/0.00 |
| 21,102,797 | M87 | R1a1c | 5 | T->C | 1.00/0.00 | 1.00/0.00 |
| 21,114,001 | M89 | F-R | 1 | C->T | 0.68/0.32 | 0.04/0.96 |
| 21,134,846 | M94 | B-R | 1 | C->A | 0.01/0.99 | 0.00/1.00 |
| 21,135,132 | M95 | O2a | 4 | C->T | 1.00/0.00 | 1.00/0.00 |
| 22,653,504 | P4 | A2 | 2 | C->T | 1.00/0.00 | 1.00/0.00 |
| 24,142,855 | P25a | R1b | 5 | A->C | 0.77/0.23 | 0.48/0.52 |
| 25,868,376 | P25b | |||||
| 26,600,000 | P25c | |||||